Research Interests
Our lab focuses on understanding rapid genetic evolution and copy number variation. Genetic evolution occurs fast when selection and mutation are combined. Many important biological phenomena depend on rapid genetic evolution, such as a pathogen’s acquisition of antibiotic resistance and avoidance of host defenses. In general, this rapid evolution is central to biology and many aspects of medical science, including all infectious diseases and cancer.
A major contributor to rapid genetic evolution is an elusive phenomenon called Copy Number Variation (CNV). CNVs are alterations of a genome that result in an abnormal number of copies of a section of DNA. Unlike point mutations, CNVs are extremely common genetic polymorphisms in all life forms, arising at rates several orders of magnitude higher than point mutations. For example, every human genome contains hundreds of CNVs, many being unique to each individual. Adjusting the copy number of any particular gene changes its expression and results in altered phenotypes, ranging from very subtle to extreme changes. Since CNVs form at very high rates and have phenotypes, they may be expected to play an important role in medicine and evolution. In recent years, CNVs have been identified as causing an increasingly large number of human disorders including Alzheimer, Parkinson, autism, schizophrenia, and many other diseases. CNVs can also contribute to resistance and susceptibility to infections, modulate drug responses, and play a central role in oncogenesis and cancer progression. Furthermore, CNVs play a major role in driving the evolution of new genes. Still, the underlying molecular mechanisms of CNVs remain unclear for all organisms. Our lab aims to unravel these central mysteries along with developing various CNV-related applications.
In order to study rapid evolution and copy number variation, our lab utilizes some of the most genetically tractable organisms: bacteria such as E. coli, Salmonella, and Acinetobacter. The projects are accessible to students at all levels and involve undergraduate and Masters students. Students are trained in important multidisciplinary areas that bridge classical and modern genetics with microbiology, molecular biology, population genetics, experimental evolution, statistics, and computation.
Publications:
A major contributor to rapid genetic evolution is an elusive phenomenon called Copy Number Variation (CNV). CNVs are alterations of a genome that result in an abnormal number of copies of a section of DNA. Unlike point mutations, CNVs are extremely common genetic polymorphisms in all life forms, arising at rates several orders of magnitude higher than point mutations. For example, every human genome contains hundreds of CNVs, many being unique to each individual. Adjusting the copy number of any particular gene changes its expression and results in altered phenotypes, ranging from very subtle to extreme changes. Since CNVs form at very high rates and have phenotypes, they may be expected to play an important role in medicine and evolution. In recent years, CNVs have been identified as causing an increasingly large number of human disorders including Alzheimer, Parkinson, autism, schizophrenia, and many other diseases. CNVs can also contribute to resistance and susceptibility to infections, modulate drug responses, and play a central role in oncogenesis and cancer progression. Furthermore, CNVs play a major role in driving the evolution of new genes. Still, the underlying molecular mechanisms of CNVs remain unclear for all organisms. Our lab aims to unravel these central mysteries along with developing various CNV-related applications.
In order to study rapid evolution and copy number variation, our lab utilizes some of the most genetically tractable organisms: bacteria such as E. coli, Salmonella, and Acinetobacter. The projects are accessible to students at all levels and involve undergraduate and Masters students. Students are trained in important multidisciplinary areas that bridge classical and modern genetics with microbiology, molecular biology, population genetics, experimental evolution, statistics, and computation.
Publications:
Current Lab Members:
Semarhy Quiñones-Soto (Co-Investigator)
Elizabeth Reis (Masters program)
Katherine Bennett (Masters program)
Tesa Winters (Masters program)
Jennifer Herrmann (Masters program)
Ryan Staley (Masters program)
Raylene Olmos
Habeeba Awwad
Rola Ghobashy
Austin Widdershoven
Daniel Davis
Kelly Faeth
Lamrot Tulu
Constancia Dominguez
Cynthia Recendez
Agata Koprowska
Ayesha Shabbir
Lab Alumni:
Shyla Difuntorum
Mariela Vega
Stephanie Avalos
Itzel Cardozo
Sam Cabral
Shannon Clayton
Nathalie Villegas
Eric McPherson
Cody Lee
Josephine Sami
Abraham Sugay
Renee Avila
Heather "Andy" Geyer
Alejandra Ahumada
Caitlin Harris
Sinai Yoo
Janeé Carter
Gerard LaBlue
Katlyn Lewis
Sophia Romero
Jasmin Suazo
Daniela Tapia-Acosta
Maggie Cortez
Paul Riling
Rebecca Preto
Kristen DeBacker
Jaime Fuentes
Emily Barentson
Anthony Milani
Lance "Teo" Courtney
Semarhy Quiñones-Soto (Co-Investigator)
Elizabeth Reis (Masters program)
Katherine Bennett (Masters program)
Tesa Winters (Masters program)
Jennifer Herrmann (Masters program)
Ryan Staley (Masters program)
Raylene Olmos
Habeeba Awwad
Rola Ghobashy
Austin Widdershoven
Daniel Davis
Kelly Faeth
Lamrot Tulu
Constancia Dominguez
Cynthia Recendez
Agata Koprowska
Ayesha Shabbir
Lab Alumni:
Shyla Difuntorum
Mariela Vega
Stephanie Avalos
Itzel Cardozo
Sam Cabral
Shannon Clayton
Nathalie Villegas
Eric McPherson
Cody Lee
Josephine Sami
Abraham Sugay
Renee Avila
Heather "Andy" Geyer
Alejandra Ahumada
Caitlin Harris
Sinai Yoo
Janeé Carter
Gerard LaBlue
Katlyn Lewis
Sophia Romero
Jasmin Suazo
Daniela Tapia-Acosta
Maggie Cortez
Paul Riling
Rebecca Preto
Kristen DeBacker
Jaime Fuentes
Emily Barentson
Anthony Milani
Lance "Teo" Courtney
Dr. Reams’ research team during Spring 2017 (from left to right): Jennifer Herrmann (Chemistry major), Dr. Drew Reams (PI), Dr. Semarhy Quiñones-Soto (co-PI), Shannon Clayton (Biology major), Nathalie Villegas (Biology major), Elizabeth Reis (Masters student), and Samuel Cabral (Biology major).
Habeeba (left) and Rola (right) presented their siderophore and gene amplification research at the 2019 California State University Program for Education and Research in Biotechnology (CSUPERB) conference in Orange County, CA
Sam Cabral presented his gene amplification research at the 2017 Sac State Student Research Symposium.
Josephine Sami (left) and Elizabeth Reis (right) resented their gene amplification research at the 2016 California State University Program for Education and Research in Biotechnology (CSUPERB) conference in Orange County, CA